Difference between revisions of "Building MPICH For Development"

Revision as of 19:12, 6 November 2013

When developing MPICH itself it is often useful to build the library differently than you would for production use. This page aggregates several tips and tricks for making your development life easier when working with MPICH.

Enable Debugging Symbols

Configure with --enable-g=dbg to get debugging symbols included in the build.

  --enable-g=option - Control the level of debugging support in the MPICH
  implementation.  option is a list of comma separated names including
      none     - No debugging
      mem      - Memory usage tracing
      handle   - Trace handle operations
      dbg      - Add compiler flag, -g, to CFLAGS, CXXFLAGS FFLAGS and F90FLAGS.
      log      - Enable debug event logging
      meminit  - Preinitialize memory associated structures and unions to
                 eliminate access warnings from programs like valgrind
      mutex    - Enable error checking on pthread mutexes
      all      - All of the above choices

Personally I ([email protected]) usually build with: --enable-g=dbg,mem,meminit,handle or --enable-g=all. I will drop some or all of these for performance testing. I also find that it is useful to include CFLAGS=-g3 to enable gcc to expand macros.

Configure With "strict"

MPICH is a very portable project and one of the only ways to ensure that we are developing portable code on a permissive compiler like gcc is to configure gcc to be as strict and pedantic as possible. The MPICH configure provides an option to make this easy: --enable-strict.

I recommend using --enable-strict=all or --enable-strict=posix for those situations where all is too constraining and you know what you are doing. This strictness will also help to catch general programming errors, not just portability issues.

Use gdb

When debugging MPICH, you may want to use gdb to step into the code to see what's going on inside the code, whether to check out a variable or to track a segmentation fault. Here are several tips for you to use gdb in MPICH development.

remove -O2 flag

--enable-fast=O0

Another way of doing this is to change the flags in config.site.

Debugging Multiple Processes

For general information of how to debug an MPI program, see discussion here. Another discussion is here.

To use gdb to debugging multiple processes. You need to have xterm installed. Then you can launch multiple MPI processes in gdb with following command:

mpiexec -n [number of processes] xterm -e gdb ./your_app

Or you want to launch gdb windows only for ranks 0 and 4.

mpiexec -n 1 xterm -e gdb ./your_app : -n  3 ./your_app : -n 1 xterm -e gdb ./your_app

A very simple way to attach gdb to a MPI process is to

1. place a empty loop in your code: while(a){}
2. use ps or pgrep to find your process id, attach gdb to it
3. use (gdb) set var a = 0 to jump out of the loop

Additional note: the default setting of xterm may be ugly. You may want to Configure xterm Fonts and Colors for Your Eyeball.

TUI

gdb provides a Text User Interface for you to show the source file, the assembly output, the program registers and gdb commands in separate text windows. Check it out in TUI. Here is a screenshot.

For mac users, you may need to build gdb from source because the default gdb provided by apple does not support TUI.

Building GDB for OS X

• http://sourceware.org/gdb/wiki/BuildingOnDarwin
• http://www.opensource.apple.com/source/lldb/lldb-69/docs/code-signing.txt

Use DDD instead of GDB

If you are more comfortable with GUI-enabled debuggers, you may want to use DDD instead of GDB. The corresponding commands for launching MPI process in ddd are:

mpiexec -n [number of processes] ddd ./your_app
mpiexec -n 1 ddd ./your_app : -n  3 ./your_app : -n 1 ddd ./your_app

Use -jN

Run make -jN where N is some number like 4 or 8. This only works starting with MPICH2-1.5, since prior to that the build system used an approach that was not parallel-make safe.

Use ccache

When developing MPICH it's not uncommon to need to make clean or make distclean fairly often for various reasons. One way to help reduce the time drain that this can be is to use ccache. On my desktop this utility cuts my build times in half or better. For setup just read the docs on the ccache site, they are pretty good.

Don't Build Unnecessary Code

If you know you won't need a particular feature of MPICH then you might be able to disable it to speed up compilation or to prevent configure from complaining. For example you can pick and choose from the following list of systems that can be disabled:

--disable-f77
--disable-fc
--disable-cxx
--disable-romio

The first three are useful if you only need the MPI C language bindings. They disable the Fortran and C++ bindings. The last one disables MPI-IO support.

Use VPATH Builds

You can build several versions of MPICH from the same source tree by doing what's known as a "VPATH build". Let's assume you have your source in some directory like: /foo/bar/mpich-trunk. If you are using an git version of the code you will need to do an ./autogen.sh in this source directory (see here.

Now let's say that you want to build two versions, one with a supported thread level of MPI_THREAD_SINGLE and one with MPI_THREAD_MULTIPLE. You would create two directories that are not in the source directory like /foo/bar/single and /foo/bar/multiple. Change to the single directory and run

 ../mpich-trunk/configure --prefix=/foo/bar/single-installed --enable-threads=single

Then make and make install.

Next change to the multiple directory and issue the same commands but replace "single" with "multiple" everywhere. You now have two builds of MPICH from the same source tree.

Platform specific build instructions

The following wiki pages contain additional platform-specific build information.

• Blue Gene/Q
• x86 and POWER using the Parallel Environment Runtime Edition